It is not a trivial task to manage R environment. Here is my note for configuration of renv for Seurat analysis. Because conda env cannot handle all R packages properly and renv cannot manage diff...

renv (version 1.0.3) uses htmltools version 0.5.6.1, but Seurat v5 uses htmltools version 0.5.7. When I initiate a renv project and then install Seurat, I encounter an issue as: /opt/miniconda3/en...

Cell Ranger is a popular software package developed by 10x Genomics for analyzing single-cell RNA sequencing (scRNA-seq) data. When you run cellranger count, it generates several output files and f...

Here I want to share and record the configuration of this Jekyll site. Here are the main steps: Fork the chirpy repo to as my own repo on GitHub. Fork this repo: https://github.com/c...

Through the development of bioinformatic research, there are more and more specific tools developed for particular tasks. However, it is not a trivial task to master all the tools in order to integ...

Single-cell sequencing has evolutionized the biomedical research for years. More applications are developed each year as well as novel analyzing methods. Sometimes it is not easy to trace all the d...

It has been a while for considering to begin this blog under the title Genomics AI. After years of diving into Genomics research, I found the best way and the only way to fully reveal the underneat...

Enzymatic methyl sequencing offers an alternative approach to bisulfite sequencing for detecting DNA methylation at single-base resolution. Notably, this method surpasses bisulfite sequencing in it...