Understand the output from cellranger
Cell Ranger is a popular software package developed by 10x Genomics for analyzing single-cell RNA sequencing (scRNA-seq) data. When you run cellranger count, it generates several output files and f...
Genomics AI
My setting for Jekyll site with Chirpy theme as a GitHub Page
Here I want to share and record the configuration of this Jekyll site. Here are the main steps: Fork the chirpy repo to as my own repo on GitHub. Fork this repo: https://github.com/c...
An idea for building blocks of many tools -- Genomkit
Through the development of bioinformatic research, there are more and more specific tools developed for particular tasks. However, it is not a trivial task to master all the tools in order to integ...
Templates for scRNA-Seq analyses
Single-cell sequencing has evolutionized the biomedical research for years. More applications are developed each year as well as novel analyzing methods. Sometimes it is not easy to trace all the d...
The purposes of this new blog
It has been a while for considering to begin this blog under the title Genomics AI. After years of diving into Genomics research, I found the best way and the only way to fully reveal the underneat...
Enzymatic methyl sequencing
Enzymatic methyl sequencing offers an alternative approach to bisulfite sequencing for detecting DNA methylation at single-base resolution. Notably, this method surpasses bisulfite sequencing in it...