Functional analysis is a crucial step in understanding the biological significance of genes identified in genomic studies. Whether you’re dealing with differentially expressed genes (DEGs) from RNA...
In bioinformatics, particularly in the analysis of DNA methylation or gene expression data, the limma package in R is a powerful tool for identifying differentially expressed genes or differentiall...
If you’re new to Jekyll and the Ruby ecosystem, managing a Jekyll site along with its dependencies can seem a bit overwhelming. However, once you understand the basics of Ruby, Gems, and Bundler, y...
In DNA methylation studies, particularly in differential analysis, researchers often face the choice between using M-values or Beta values. While both metrics provide insights into methylation leve...
Problem Recently, while working on normalizing an RGSet object using the preprocessQuantile function in R, I encountered the following error: mSetSq <- preprocessQuantile(rgSet) Error in norma...
When working with R and renv to manage project dependencies, you might encounter issues during package installation, particularly when using a Conda environment. In this post, I’ll walk through a p...
Next-Generation Sequencing (NGS) is a powerful tool in genomics research, allowing for the high-throughput sequencing of DNA and RNA. To ensure the accuracy and reliability of NGS experiments, rese...
The current nfcore/smrnaseq pipeline (2.3.0)does not support spike-in sequences. However, it is possible to add spike-in sequences to the pipeline by following the steps below: Download the spike-...
When you are working on a Github repository with Jupyter Notebooks (ipynb), it is very likely that you only want to track the scripts by git, instead of tracking all the executed results. If you ju...
In our institute, we have a few Ubuntu servers that we want to monitor. In order to monitor these servers, we will use Prometheus and Grafana. Here are the steps to install and configure Prometheus...