When developing a bioinformatics Python package on GitHub, choosing the right license is essential. Your license determines how others can use, modify, and distribute your software. This article wi...
Introduction Python packaging has come a long way from its early days when setup.py was the standard for defining package metadata. While setup.py and setup.cfg have served their purpose, they lac...
Table of Contents Table of Contents Introduction: What is Nix? Installing Nix Tools Installing Nix Installing Nixpkgs Installing NixOS Installing Nix Flakes ...
10x Genomics offers a comprehensive suite of solutions tailored for various single-cell and spatial genomics applications. Each product is designed to address specific research objectives, utilizin...
These scripts aims to calculate the Gigabase output from all sequencers we have. from interop import py_interop_run, py_interop_run_metrics, py_interop_summary def get_gigabase(bcl_path): # D...
Recently I am trying Agendo API and want to record the testing code here, because the documentation on Agendo’s site isn’t updated. import json import requests import base64 # Agendo API base pat...
In machine learning and artificial intelligence workflows, the H5 file format is widely used for storing massive datasets and matrices. H5 files, based on the HDF5 format, are efficient for both re...
In the fast-paced world of deep learning, monitoring your model’s performance during training is crucial for understanding how well it is learning, diagnosing potential issues, and optimizing the t...
When training neural networks, you might notice that batch sizes and the number of nodes in layers often align with powers of two. But why is this the case? The answer lies in how GPUs, the engines...
When building dense neural networks, one of the foundational steps you can take to ensure your model trains effectively is input normalization. This seemingly simple preprocessing step can have a p...