For the most up-to-date publication record, see the following external profiles:

Below is a selected list of publications that reflect my work in computational genomics, long noncoding RNAs, regulatory genomics, and translational bioinformatics.

• Li, Z., Kuo, C. C., Ticconi, F., Shaigan, M., Gehrmann, J., Gusmao, E. G., … & Costa, I. G. (2023). RGT: a toolbox for the integrative analysis of high throughput regulatory genomics data. BMC bioinformatics, 24(1), 1-12.
• Xu, H., Li, Z., Kuo, C. C., Götz, K., Look, T., de Toledo, M. A., … & Zenke, M. (2023). A lncRNA identifies IRF8 enhancer element in negative feedback control of dendritic cell differentiation. Elife, 12, e83342.
• Barsoum, M., Stenzel, A. T., Bochyńska, A., Kuo, C. C., Tsompanidis, A., Sayadi-Boroujeni, R., … & Lüscher, B. (2022). Loss of the Ash2l subunit of histone H3K4 methyltransferase complexes reduces chromatin accessibility at promoters. Scientific Reports, 12(1), 21506.
• Leisegang, M. S., Bains, J. K., Seredinski, S., Oo, J. A., Krause, N. M., Kuo, C. C., … & Brandes, R. P. (2022). HIF1α-AS1 is a DNA: DNA: RNA triplex-forming lncRNA interacting with the HUSH complex. Nature communications, 13(1), 6563.
• Božić, T., Kuo, C. C., Hapala, J., Franzen, J., Eipel, M., Platzbecker, U., … & Wagner, W. (2021). Investigation of measurable residual disease in acute myeloid leukemia by DNA methylation patterns. Leukemia, 1-10.
• Kuo, C. C., Hänzelmann, S., Cetin, N. S., Frank, S., Zajzon, B., Derks, J.-P., … Costa, I. G. (2019). Detection of RNA–DNA binding sites in long noncoding RNAs. Nucleic Acids Research.
• Sentürk Cetin, N., Kuo, C. C., Ribarska, T., Li, R., Costa, I. G., & Grummt, I. (2019). Isolation and genome-wide characterization of cellular DNA:RNA triplex structures. Nucleic Acids Research.
• Frank, S., Ahuja, G., Bartsch, D., Russ, N., Yao, W., Kuo, C. C., … Kurian, L. (2018). yylncT Defines a Class of Divergently Transcribed lncRNAs and Safeguards the T-mediated Mesodermal Commitment of Human PSCs. Cell Stem Cell.
• Kalwa, M., Hänzelmann, S., Otto, S., Kuo, C. C., Franzen, J., Joussen, S., … Wagner, W. (2016). The lncRNA HOTAIR impacts on mesenchymal stem cells via triple helix formation. Nucleic Acids Research.

If you are looking for current work beyond these selected papers, the external profiles above are the best source of record.