Publications
Please check the following profile for the latest records:
Below is a list of my main publications:
- Li, Z., Kuo, C. C., Ticconi, F., Shaigan, M., Gehrmann, J., Gusmao, E. G., … & Costa, I. G. (2023). RGT: a toolbox for the integrative analysis of high throughput regulatory genomics data. BMC bioinformatics, 24(1), 1-12.
- Xu, H., Li, Z., Kuo, C. C., Götz, K., Look, T., de Toledo, M. A., … & Zenke, M. (2023). A lncRNA identifies IRF8 enhancer element in negative feedback control of dendritic cell differentiation. Elife, 12, e83342.
- Barsoum, M., Stenzel, A. T., Bochyńska, A., Kuo, C. C., Tsompanidis, A., Sayadi-Boroujeni, R., … & Lüscher, B. (2022). Loss of the Ash2l subunit of histone H3K4 methyltransferase complexes reduces chromatin accessibility at promoters. Scientific Reports, 12(1), 21506.
- Leisegang, M. S., Bains, J. K., Seredinski, S., Oo, J. A., Krause, N. M., Kuo, C. C., … & Brandes, R. P. (2022). HIF1α-AS1 is a DNA: DNA: RNA triplex-forming lncRNA interacting with the HUSH complex. Nature communications, 13(1), 6563.
- Božić, T., Kuo, C. C., Hapala, J., Franzen, J., Eipel, M., Platzbecker, U., … & Wagner, W. (2021). Investigation of measurable residual disease in acute myeloid leukemia by DNA methylation patterns. Leukemia, 1-10.
- Kuo, C. C., Hänzelmann, S., Cetin, N. S., Frank, S., Zajzon, B., Derks, J.-P., … Costa, I. G. (2019). Detection of RNA–DNA binding sites in long noncoding RNAs. Nucleic Acids Research.
- Sentürk Cetin, N., Kuo, C. C., Ribarska, T., Li, R., Costa, I. G., & Grummt, I. (2019). Isolation and genome-wide characterization of cellular DNA:RNA triplex structures. Nucleic Acids Research.
- Frank, S., Ahuja, G., Bartsch, D., Russ, N., Yao, W., Kuo, C. C., … Kurian, L. (2018). yylncT Defines a Class of Divergently Transcribed lncRNAs and Safeguards the T-mediated Mesodermal Commitment of Human PSCs. Cell Stem Cell.
- Kalwa, M., Hänzelmann, S., Otto, S., Kuo, C. C., Franzen, J., Joussen, S., … Wagner, W. (2016). The lncRNA HOTAIR impacts on mesenchymal stem cells via triple helix formation. Nucleic Acids Research.